What is pLDDT? Reading AlphaFold Confidence Scores Before Docking

By BioDockify Computational Research Team · September 19, 2026

pLDDT explained: thresholds (90/70/50), PAE matrices, why AlphaFold hallucinates loops, and exactly which residues to trust or delete before molecular docking.

Read the complete article with tables, code and references on BioDockify.